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  • #---------------------------------------------------------------------------------------
    #                                     GENERAL CONTROLS
    #---------------------------------------------------------------------------------------
    # DESCRIPTION
    # path      --- the directory, in which the model is launched 
    #               (required to be set in some UNIX-systems)
    # runmode 1 --- stand alone run
    # runmode 2 --- running in atmospheric model as lake parametrization
    # omp     0 --- OpenMP is not used
    # omp     1 --- OpenMP is used     
    #---------------------------------------------------------------------------------------
    #
    path ''     
    runmode 1 
    omp 0
    #
    #----------------------------------------------------------------------------------------
    #                            SPATIAL RESOLUTION OF THE MODEL
    #----------------------------------------------------------------------------------------
    # DESCRIPTION
    # nstep_keps --- number of timesteps of k-epsilon parameterization per on model timestep
    # M         --- number of layers in water layer
    # Mice      --- number of layers in upper and deep layers
    # ns        --- number of levels in soil
    # d_surf    --- grid zooming parameter at the surface, n/d
    # d_bot     --- grid zooming parameter at the bottom,  n/d
    #----------------------------------------------------------------------------------------
    #
    nstep_keps 1
    M  20
    ns 10
    Mice 10
    d_surf 1.E-2
    d_bot  1.E-2
    #
    #----------------------------------------------------------------------------------------
    #                            CONTROLS FOR PHYSICS OF THE MODEL
    #----------------------------------------------------------------------------------------
    # DESCRIPTION
    #     PBL parameterization
    #     PBLpar -1 --- sensible, latent heat and momentum fluxes are given as input for the model
    #     PBLpar  0 --- the latent heat flux is set to zero, while sensible heat and momentum fluxes
    #                   are constant in time, specified by sensflux0 and momflux0
    #     PBLpar  1 --- Businger-Dayer formulas (Monin-Obukhov theory) for exchange coefficients
    #     PBLpar  2 --- formulation from NH3d
    #     PBLpar  3 --- formulation from FLake
    #     PBLpar  4 --- formulation implemented by M.Chechin
    #     c_d       --- the momentum exchange coefficient, n/d
    #     (if -999, momentum flux is calculated by surface flux scheme)
    #     waveenh 0 --- the shallow water correction of surface fluxes (Panin et al., 1996) is OFF
    #     waveenh 1 --- the shallow water correction of surface fluxes (Panin et al., 1996) is ON
    #     momflxpart 0 --- all momentum flux from the atmosphere is consumed by currents acceleration
    #     momflxpart 1 --- momentum flux from the atmosphere is partitioned between wave developemnt
    #                      (controlled by fetch) and currents acceleration,
    #                      following Lin et al. (2002, J. Phys. Ocean.)
    #     kwe       --- the factor of turbulence enhancement by wave breaking (wave energy factor),   n/d
    #     Relative to water currents wind
    #     relwind 0 --- relative wind is off
    #     relwind 1 --- relative wind is on
    #     Equation of state
    #     eos     1 --- from Hostetler model
    #     eos     2 --- from TEOS-2010
    #     eos     3 --- for Kivu lake including salinity
    #     nmeltpoint 1 --- melting point linearly dependent on salinity
    #     nmeltpoint 2 --- TEOS-2010 formula
    #     Turbulent mixing parameterization
    #     Turbpar 1 --- "Empirical" parametrization: Stepanenko, Lykosov (2005)
    #     Turbpar 2 --- "E-epsilon"("K-epsilon") parameterization: k=E**2/eps with 
    #                   prognostic equations for E and eps 
    #     Turbpar 3 --- Nickuradze (NICK) formulation: Rodi (1993)    
    #     Turbpar 4 --- Parabolic (PARAB) formulation: Engelund (1976)
    #     Turbpar 7 --- RNG (re-normalization group) formulation: Simoes (1998)
    #     stabfunc 1 --- constant stability functions (standard k-epsilon model)
    #     stabfunc 2 --- stability functions according to (Canuto et al., 2001)
    #     stabfunc 3 --- stability functions according to (Galperin et al., 1988)
    #     kepsbc   1 --- Neuman boundary conditions for unstratified sheared flow (Burchard, 2002)
    #     kepsbc   2 --- Neuman boundary conditions for unstratified non-sheared flow with wave breaking (Burchard, 2002)
    #     kepsbc   3 --- Neuman boundary conditions unstratified sheared flow with wave breaking  (Burchard, 2002)
    #     kepsbc   4 --- Neuman boundary conditions for free convection
    #     Water surface albedo: variable or constant
    #     varalb 0  --- constant  
    #     varalb 1  --- sun height dependent
    #     soiltype 1   --- the soil type is "sand"
    #     soiltype 2   --- the soil type is "loamy sand"
    #     soiltype 3   --- the soil type is "sandy loam"
    #     soiltype 4   --- the soil type is "loam"
    #     soiltype 5   --- the soil type is "silt loam"
    #     soiltype 6   --- the soil type is "sandy clay loam"
    #     soiltype 7   --- the soil type is "clay loam"
    #     soiltype 8   --- the soil type is "silty clay loam"
    #     soiltype 9   --- the soil type is "sandy clay"
    #     soiltype 10  --- the soil type is "silty clay"
    #     soiltype 11  --- the soil type is "clay"
    #     soil_depth   --- depth of the soil layer, m
    #     thermokarst_meth_prod 0. --- switch for old organics methane production under thermokarst lakes is OFF
    #     thermokarst_meth_prod 1. --- switch for old organics methane production under thermokarst lakes is ON
    #     soil_meth_prod 0. --- switch for new organics methane production under lakes is OFF
    #     soil_meth_prod 1. --- switch for new organics methane production under lakes is ON
    #     tricemethhydr 0. --- ice in soil pores is treated as pure ice
    #     tricemethhydr 1. --- ice in soil pores is treated as methane hydrate
    #     skin     0   --- the skin temperature parameterization is off
    #     skin     1   --- the skin temperature parameterisation is on
    #     sedim    0   --- gravitational sedimentation of tracer is NOT taken into account
    #     sedim    1   --- gravitational sedimentation of tracer is taken into account
    #     massflux 0   --- the massflux parameterization of convection (Siebesma et al., 2007) if OFF
    #     massflux 1   --- the massflux parameterization of convection (Siebesma et al., 2007) if ON
    #     sensflux0    --- sensible heat flux upwards, constant in time (relevant if PBLpar = 0), W/m**2
    #     momflux0     --- momentum flux downwards (positive), constant in time (relevant if PBLpar = 0), N/m**2
    #     ifrad    1   --- all radiation fluxes at the water surface are taken into account 
    #     ifrad    0   --- all radiation fluxes are set to zero
    #     dyn_pgrad 0  --- dynamic pressure gradient is OFF 
    #     dyn_pgrad 1  --- dynamic pressure gradient is ON 
    #     zero_model 0 --- zero-dimensional model is ON
    #     zero_model 1 --- zero-dimensional model is OFF
    #     outflpar   0 --- variables value at the outflow = cross-section mean 
    #     outflpar   1 --- the cross-section mean = 0.5*(inflow value + outflow value)
    #     outflpar   2 --- variables at the outflow are calculated using Lagrangian approach
    #     Note: zero-dimensional model is now implemented only for open water season and one-point simulation
    #     deadvol      --- the depth (m) corresponding to "dead volume" - the minimal allowed reservoir volume
    #----------------------------------------------------------------------------------------
    #
    varalb   1
    PBLpar   1
    waveenh  0
    momflxpart 1
    c_d      -999
    kwe      100.
    relwind  0
    eos      5
    lindens  0
    nmeltpoint 1
    Turbpar  2
    stabfunc 2
    kepsbc   1
    soiltype 5
    soil_depth  10.
    soilswitch  1
    saltice 0 
    nsoilcols 5
    tricemethhydr 0.
    carbon_model 1
    skin     0
    massflux 0
    ifrad    1
    ifbubble 1
    sedim    0
    salsoil  0
    dyn_pgrad 0
    pgrad    0.
    nManning 5.E-2
    horvisc  0.
    
    backdiff0 -999.
    botfric  1
    zero_model 0
    thermokarst_meth_prod 0.
    soil_meth_prod 1.
    outflpar 0
    #
    sensflux0 100.
    momflux0  1.e-15
    soilbotflx 0.
    cuette 0
    #
    VmaxCH4aeroboxid -999.
    khsCH4           -999.
    khsO2            -999.
    r0methprod       -999.
    #
    deadvol 0.
    #
    #----------------------------------------------------------------------------------------
    #                           INITIAL CONDITIONS FOR TEMPERATURE
    #----------------------------------------------------------------------------------------
    #
    #T_profile 15
    #0.1528798623    15.6593492318   1.0967626609E-3  0.  0.  0.
    #0.4586201021    15.3698204159   1.1244681301E-3  0.  0.  0.
    #0.7643487883    15.2880392733   1.1389363045E-3  0.  0.  0.
    #1.0700665454    15.3784681078   1.2157976331E-3  0.  0.  0.
    #1.3757244583    15.4705468887   1.6825468273E-3  0.  0.  0.
    #1.6811083613    15.3023162147   3.5392949352E-3  0.  0.  0.
    #1.9859062169    14.8535425863   6.5826901114E-3  0.  0.  0.
    #2.2900303837    14.5124893839   9.1725234989E-3  0.  0.  0.
    #2.5934888392    13.6183860236   12.0747625176E-3  0.  0.  0.
    #2.8960785319    13.2161902403   16.431655897E-3  0.  0.  0.
    #3.1976916336    12.5317665948   20.3271090163E-3  0.  0.  0.
    #3.4987146359    11.6504498125   21.2290960955E-3  0.  0.  0.
    #3.7994820663    11.5276435987   22.3359795778E-3  0.  0.  0.
    #4.0946210218    11.6325191677   23.7094310675E-3  0.  0.  0.
    #7.              5.              30.E-3            0.  0.  0.
    T_profile 8
    0.5  10.59  1.0E-3  0.  0.  0. 0.
    1.0  10.56  1.0E-3  0.  0.  0. 0.
    1.5  10.56  1.0E-3  0.  0.  0. 0.
    2.0  10.57  1.0E-3  0.  0.  0. 0.
    2.5  10.56  1.0E-3  0.  0.  0. 0.
    3.0  10.54  1.0E-3  0.  0.  0. 0.
    3.5  10.49  1.0E-3  0.  0.  0. 0.
    4.0  10.47  1.0E-3  0.  0.  0. 0.
    #
    T_soilprofile 2
    0.  10.
    7. 10.
    #.
    #----------------------------------------------------------------------------------------
    #                               BOUNDARY CONDITIONS: TRIBUTARIES AND EFFLUENTS
    #----------------------------------------------------------------------------------------
    # DESCRIPTION
    # tribheat      --- the switch for thermal effect of tributaries and effluents, 0 - OFF
    #                                                                               1 - ON
    # inflowprof    --- the profile of inflow:
    #                   width [m] velocity [m] temperature [C]
    # outflowprof   --- the profile of outflow:
    #                   width [m] velocity [m]
    #-----------------------------------------------------------------------------------------
    #
    #
    tribheat       0
    N_tribin 0
    N_triblev 0
    iefflloc 1
    fileinflow 'BolshoiVilui20153_inflows.dat'
    fileoutflow 'BolshoiVilui20153_outflow.dat'
    dttribupdate 0.25
    #
    #----------------------------------------------------------------------------------------
    #            DATA ASSIMILATION CONTROLS (NOT OPERATIONAL: PUT EVERYTHING TO 0)
    #----------------------------------------------------------------------------------------
    # assim        --- data assimilation technique:       0 - no data assimilation
    #                                                     1 - 
    #                                                     2 - Raleigh damping towards observations
    #                                                     3 - Cressman weighting
    #                                                     4 - ?
    # as_window    --- assimilation window:               1 - as_window is spinup period
    #
    #----------------------------------------------------------------------------------------
    #
    error_cov   0
    assim       0
    #as_window   1
    #
    #----------------------------------------------------------------------------------------
    #                      OUTPUT CONTROLS (for ASCII files)
    #----------------------------------------------------------------------------------------
    # DESCRIPTION
    # turb_out     --- output turbulence characteristics: 1 - on, 0 - off
    # monthly*     --- monthly mean profiles output:      1 - on, 0 - off
    # daily*       --- daily   mean profiles output:      1 - on, 0 - off
    # hourly*      --- hourly  mean profiles output:      1 - on, 0 - off
    # everystep*   --- every time step profiles output:   1 - on, 2 - on but without profiles, 0 - off
    # time_series* --- output of time series of layer thickness and surface values:      
    #                                                     1 - on, 0 - off
    # dt_out*      --- time interval for time series output, hours
    # nscreen      --- the period of screen output, timesteps
    # scale_output --- the switch for scaling of output of turbulent characteristics: 1 - on, 0 - off
    #                  (set 0 for simulations of ice-covered lakes)
    # ngrid_out    --- the number of output levels for vertical water temperature profiles: 
    #                  -1 - use numerical grid levels
    #                  >0 - use ngrid_out levels (in meters) given below
    # ngridsoil_out--- the number of output levels for vertical soil temperature profiles: 
    #                  -1 - use numerical grid levels
    #                  >0 - use ngridsoil_out levels (in meters) given below
    #----------------------------------------------------------------------------------------
    #
    turb_out    0
    monthly     0
    daily       1
    hourly      1
    everystep   0
    time_series 1
    dt_out      1
    nscreen     1000
    scale_output 0
    accum_begin 2003060100
    accum_end   2004060100
    zserout -999.
    rtemp 1
    -999. -999. -999.
    #
    ngrid_out 8
    0.5
    1.0
    1.5
    2.0
    2.5
    3.0
    3.5
    3.95
    #
    ngridice_out 2
    0.
    0.2
    #
    ngridsoil_out 8
    0.
    1.
    2.
    3.
    4.
    5.
    6.
    7.
    #
    #----------------------------------------------------------------------------------------
    # NOTE: VARIABLES, DENOTED BY ASTERISK *, ARE USED ONLY IN STANDALONE RUNS OF THE MODEL
    #----------------------------------------------------------------------------------------
    end