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@Article{Barbara2014,
  Title                    = {{Effects of cooling and internal wave motions on gas transfer coefficients in a boreal lake}},
  Author                   = {Barbara, Santa},
  Year                     = {2014},
  Number                   = {1998},
  Pages                    = {1--16},
  Volume                   = {1},

  File                     = {::},
  Keywords                 = {carbon dioxide,eddy covariance,gas transfer,heat flux,thermocline tilting,upwelling}
}

@Article{JGRG:JGRG339,
  Title                    = {{Fates of methane from different lake habitats: Connecting whole-lake budgets and CH4 emissions}},
  Author                   = {Bastviken, David and Cole, Jonathan J and Pace, Michael L and de Bogert, Matthew C},
  Journal                  = {Journal of Geophysical Research: Biogeosciences},
  Year                     = {2008},
  Number                   = {G2},
  Pages                    = {n/a----n/a},
  Volume                   = {113},

  Doi                      = {10.1029/2007JG000608},
  ISSN                     = {2156-2202},
  Keywords                 = { methane emission, methane oxidation, sediment,lake methane cycling},
  Url                      = {http://dx.doi.org/10.1029/2007JG000608}
}

@Article{Bastviken2011,
  Title                    = {{Freshwater Methane Emissions Offset the Continental Carbon Sink}},
  Author                   = {Bastviken, David and Tranvik, Lars J and Downing, John A and Crill, Patrick M and Enrich-Prast, Alex},
  Journal                  = {Science},
  Year                     = {2011},
  Number                   = {6013},
  Pages                    = {50},
  Volume                   = {331},

  Abstract                 = {Inland waters (lakes, reservoirs, streams, and rivers) are often substantial methane (CH4) sources in the terrestrial landscape. They are, however, not yet well integrated in global greenhouse gas (GHG) budgets. Data from 474 freshwater ecosystems and the most recent global water area estimates indicate that freshwaters emit at least 103 teragrams of CH4 year−1, corresponding to 0.65 petagrams of C as carbon dioxide (CO2) equivalents year−1, offsetting 25\% of the estimated land carbon sink. Thus, the continental GHG sink may be considerably overestimated, and freshwaters need to be recognized as important in the global carbon cycle.},
  Doi                      = {10.1126/science.1196808},
  Url                      = {http://www.sciencemag.org/content/331/6013/50.abstract}
}

@Article{Bazhin2001,
  Title                    = {Gas transport in a residual layer of a water basin },
  Author                   = {N.M. Bazhin},
  Journal                  = {Chemosphere - Global Change Science },
  Year                     = {2001},
  Number                   = {1},
  Pages                    = {33 - 40},
  Volume                   = {3},

  Abstract                 = {The transport of gases forming in the sedimentary (active) layer of water basins and coming from the atmosphere is discussed. Diffusion equations are used to derive differential equations describing a change in the concentrations in the sedimentary layer with depth. The asymptotic equations describing a change in gas concentration with active layer depth have been derived. It is shown that the rate of gas generation (W) and the position of the upper boundary of bubbling (h) are related via the relationship W∼h−2. A comparison has been made with experimental data. },
  Doi                      = {http://dx.doi.org/10.1016/S1465-9972(00)00041-6},
  ISSN                     = {1465-9972},
  Keywords                 = {Methane},
  Owner                    = {victor},
  Timestamp                = {2014.07.27},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S1465997200000416}
}

@Article{Bell2006,
  Title                    = {{Using a 1-D mixing model to simulate the vertical flux of heat and oxygen in a lake subject to episodic mixing}},
  Author                   = {Bell, V A and George, D G and Moore, R J and Parker, J},
  Journal                  = {Ecological Modelling},
  Year                     = {2006},
  Number                   = {1–2},
  Pages                    = {41--54},
  Volume                   = {190},

  Abstract                 = {A one-dimensional, two-layer lake model is used to simulate the daily temperature and oxygen profile of an English Lake in response to changes in wind, air temperature and radiation. The thermal model component derives from the \{TEMIX\} lake model originally developed by the Institute of Limnology in St. Petersburg [Mironov, D.V., Golosov, S.D., Zilitinkevitch, S.S., Kreiman, K.D., Terzhevik, A.Y., 1991. Seasonal changes of temperature and mixing conditions in a lake. In: Zilitinkevitch, S.S. (Ed.), Modelling Air–Lake Interactions. Springer-Verlag, pp. 74–90]. This paper describes the model's adaptation and its extension to incorporate dissolved oxygen to simulate periods of anoxia of short duration during summer stratification. The new oxygen model component, which is based on mass-balance principles, divides the lake into two layers in a similar way to the thermal model. Its primary purpose is to model periods of anoxia for use in studies of fish survival. The model has been tested over a 10-year period from 1991 to 1999 using daily weather data and fortnightly observations of chlorophyll a and secchi depth. Ten years of fortnightly oxygen measurements, together with 2 years of more detailed (hourly) oxygen data, indicate that simulated and observed oxygen levels are in reasonable agreement considering the sparseness of the chlorophyll observations. The balance between the relative effects of temperature and \{BOD\} on oxygen depletion is of particular importance to model accuracy. },
  Doi                      = {http://dx.doi.org/10.1016/j.ecolmodel.2005.02.025},
  ISSN                     = {0304-3800},
  Keywords                 = {Mathematical modelling},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S0304380005002279}
}

@Article{Bergstroem2007,
  Title                    = {{Methane efflux from littoral vegetation stands of southern boreal lakes: An upscaled regional estimate}},
  Author                   = {Bergstr\"{o}m, Irina and M\"{a}kel\"{a}, Suvi and Kankaala, Paula and Kortelainen, Pirkko},
  Journal                  = {Atmospheric Environment},
  Year                     = {2007},
  Number                   = {2},
  Pages                    = {339--351},
  Volume                   = {41},

  Abstract                 = {We studied the role of vegetated littoral area in the efflux of methane (CH4) in a southern boreal landscape (1600\&\#xa0;km2), in Finland, covered by 619 lakes. A regression model was constructed to describe the relationship between lake area or lake shoreline length and total macrophyte or total emergent macrophyte coverage. Phragmites australis and Equisetum fluviatile were by far the most widely distributed emergent macrophytes in the area with a proportion of 40\% of all zone-forming macrophytes. The zone-forming floating-leaved species Nuphar lutea, Potamogeton natans and Sparganium spp. covered 44\% of all vegetated littoral areas. The strong temperature dependence of the emission rates was taken into consideration in the emission estimations for P. australis and E. fluviatile. The regional efflux, estimated for the growing seasons 1998–2002, varied between 0.8×105 and 1.1×105\&\#xa0;kg \{CH4\} and between 1.6×105 and 2.4×105\&\#xa0;kg CH4, respectively. The emissions from the stands of floating-leaved species were negligible compared to the emissions from stands of P. australis and E. fluviatile. This indicates that species specific emission rates and areal coverage of the dominating species, as well as ambient temperature, should all be carefully considered when estimating the total regional emissions of \{CH4\} from lake littorals. The natural open ombrogenous bogs and minerogenous fens in the study region covered a 2.5-fold larger area than P. australis and E. fluviatile littoral, but their emissions were estimated to be only 78\% of the emissions of P. australis and E. fluviatile, indicating that vegetated lake littoral is an important natural \{CH4\} source in the region.},
  Doi                      = {http://dx.doi.org/10.1016/j.atmosenv.2006.08.014},
  ISSN                     = {1352-2310},
  Keywords                 = {Methane},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S1352231006008326}
}

@Article{Casper2000,
  Title                    = {{Fluxes of methane and carbon dioxide from a small productive lake to the atmosphere}},
  Author                   = {Casper, Peter and Maberly, StephenC. and Hall, GrahameH. and Finlay, BlandJ.},
  Journal                  = {Biogeochemistry},
  Year                     = {2000},
  Number                   = {1},
  Pages                    = {1--19},
  Volume                   = {49},

  Doi                      = {10.1023/A:1006269900174},
  ISSN                     = {0168-2563},
  Keywords                 = {carbon dioxide; diffusion; ebullition; emission; f},
  Publisher                = {Kluwer Academic Publishers},
  Url                      = {http://dx.doi.org/10.1023/A:1006269900174}
}

@Article{Cole1998,
  Title                    = {{Atmospheric exchange of carbon dioxide in a low-wind oligotrophic lake measured by the addition of SF6}},
  Author                   = {Cole, Jonathan J and Caraco, Nina F},
  Journal                  = {Li},
  Year                     = {1998},
  Number                   = {4},
  Pages                    = {647--656},
  Volume                   = {43},

  Doi                      = {10.4319/lo.1998.43.4.0647}
}

@Article{Deutzmann2011,
  Title                    = {{Anaerobic oxidation of methane in sediments of Lake Constance, an oligotrophic freshwater lake.}},
  Author                   = {Deutzmann, J\"{o}rg S and Schink, Bernhard},
  Journal                  = {Applied and environmental microbiology},
  Year                     = {2011},

  Month                    = jul,
  Number                   = {13},
  Pages                    = {4429--4436},
  Volume                   = {77},

  Abstract                 = {Anaerobic oxidation of methane (AOM) with sulfate as terminal electron acceptor has been reported for various environments, including freshwater habitats, and also, nitrate and nitrite were recently shown to act as electron acceptors for methane oxidation in eutrophic freshwater habitats. Radiotracer experiments with sediment material of Lake Constance, an oligotrophic freshwater lake, were performed to follow 14CO2 formation from 14CH4 in sediment incubations in the presence of different electron acceptors, namely, nitrate, nitrite, sulfate, or oxygen. Whereas 14CO2 formation without and with sulfate addition was negligible, addition of nitrate increased 14CO2 formation significantly, suggesting that AOM could be coupled to denitrification. Nonetheless, denitrification-dependent AOM rates remained at least 1 order of magnitude lower than rates of aerobic methane oxidation. Using molecular techniques, putative denitrifying methanotrophs belonging to the NC10 phylum were detected on the basis of the pmoA and 16S rRNA gene sequences. These findings show that sulfate-dependent AOM was insignificant in Lake constant sediments. However, AOM can also be coupled to denitrification in this oligotrophic freshwater habitat, providing first indications that this might be a widespread process that plays an important role in mitigating methane emissions.},
  Doi                      = {10.1128/AEM.00340-11},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Deutzmann\&Schink2011.pdf:pdf},
  ISBN                     = {4907531884047},
  ISSN                     = {1098-5336},
  Keywords                 = {16S,16S: genetics,Anaerobiosis,Bacteria,Bacteria: genetics,Bacteria: metabolism,Bacterial,Bacterial: chemistry,Bacterial: genetics,Carbon Dioxide,Carbon Dioxide: metabolism,Carbon Radioisotopes,Carbon Radioisotopes: metabolism,Cluster Analysis,DNA,Denitrification,Fresh Water,Fresh Water: microbiology,Methane,Methane: metabolism,Molecular Sequence Data,Nitrates,Nitrates: metabolism,Nitrites,Nitrites: metabolism,Oxidation-Reduction,Oxygen,Oxygen: metabolism,Oxygenases,Oxygenases: genetics,Phylogeny,RNA,Ribosomal,Ribosomal: chemistry,Ribosomal: genetics,Sequence Analysis,Staining and Labeling,Staining and Labeling: methods,Sulfates,Sulfates: metabolism},
  Pmid                     = {21551281},
  Url                      = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3127698\&tool=pmcentrez\&rendertype=abstract}
}

@Article{Durisch-Kaiser2011,
  Title                    = {{What prevents outgassing of methane to the atmosphere in Lake Tanganyika?}},
  Author                   = {Durisch-Kaiser, Edith and Schmid, Martin and Peeters, Frank and Kipfer, Rolf and Dinkel, Christian and Diem, Torsten and Schubert, Carsten J. and Wehrli, Bernhard},
  Journal                  = {Journal of Geophysical Research},
  Year                     = {2011},

  Month                    = jun,
  Number                   = {G2},
  Pages                    = {G02022},
  Volume                   = {116},

  Doi                      = {10.1029/2010JG001323},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Durisch-Kaiser2011.pdf:pdf},
  ISSN                     = {0148-0227},
  Keywords                 = {http://dx.doi.org/10.1029/2010JG001323, doi:10.102},
  Url                      = {http://doi.wiley.com/10.1029/2010JG001323}
}

@Article{Fennel2003,
  Title                    = {{Subsurface maxima of phytoplankton and chlorophyll: Steady-state solutions from a simple model}},
  Author                   = {Fennel, Katja and Boss, Emmanuel},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {2003},
  Number                   = {4},
  Pages                    = {1521--1534},
  Volume                   = {48},

  Doi                      = {10.4319/lo.2003.48.4.1521}
}

@Article{Golosov2006,
  Title                    = {{Physical background of the development of oxygen depletion in ice-covered lakes}},
  Author                   = {Golosov, S and O.A.Mahrer and E.Shipunova and A.Terzhevik and G.Zdorovennova and G.Kirillin},
  Journal                  = {Oecologia},
  Year                     = {2006},
  Pages                    = {331--340},
  Volume                   = {151},

  Doi                      = {10.1007/s00442-006-0543-8}
}

@Article{Hantush2007,
  Title                    = {{Modeling nitrogen carbon cycling and oxygen consumption in bottom sediments}},
  Author                   = {Hantush, M M},
  Journal                  = {Advances in Water Resources},
  Year                     = {2007},

  Month                    = jan,
  Pages                    = {59--79},
  Volume                   = {30},

  Doi                      = {10.1016/j.advwatres.2006.02.007}
}

@Article{Harrits1980,
  Title                    = {{Stratification of aerobic methane-oxidizing organisms in Lake Mendota, Madison, Wisconsin}},
  Author                   = {Harrits, Susan M and Hanson, R S},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {1980},
  Number                   = {3},
  Pages                    = {412--421},
  Volume                   = {25},

  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Harrits\&Hanson1980.pdf:pdf}
}


@Article{Hofmann2010,
  Title                    = {{Wave-induced release of methane: Littoral zones as source of methane in lakes}},
  Author                   = {Hofmann, Hilmar and Federwisch, Luisa and Peeters, Frank},
  Journal                  = {Limnology and Oceanography},
  Year                     = {2010},
  Number                   = {5},
  Pages                    = {1990--2000},
  Volume                   = {55},

  Doi                      = {10.4319/lo.2010.55.5.1990},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Hofman2010.pdf:pdf},
  ISSN                     = {00243590},
  Url                      = {http://www.aslo.org/lo/toc/vol\_55/issue\_5/1990.html}
}

@Article{Huttunen2006,
  Title                    = {{Methane fluxes at the sediment-water interface in some boreal lakes and reservoirs}},
  Author                   = {Huttunen, J T and V\"{a}is\"{a}nen, T S and Hellsten, S K and Martikainen, P J},
  Journal                  = {Boreal Env. Res.},
  Year                     = {2006},
  Pages                    = {27--34},
  Volume                   = {11}
}

@Article{Imberger1985,
  Title                    = {{The diurnal mixed layer}},
  Author                   = {Imberger, J},
  Journal                  = {Limnology and Oceanography},
  Year                     = {1985},
  Number                   = {4},
  Pages                    = {737--770},
  Volume                   = {30},

  Doi                      = {10.4319/lo.1985.30.4.0737},
  File                     = {::},
  ISSN                     = {00243590},
  Url                      = {http://www.aslo.org/lo/toc/vol\_30/issue\_4/0737.html}
}

@Article{Iversen1987,
  Title                    = {{Big Soda Lake ( Nevada ). 3 . Pelagic methanogenesis and anaerobic methane oxidation}},
  Author                   = {Iversen, Niels and Oremland, Ronald S and Klug, Michael J},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {1987},
  Number                   = {4},
  Pages                    = {804--814},
  Volume                   = {32},

  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/iversen\_1987\_soda3.pdf:pdf}
}

@Article{Jamialahmadi1994,
  Title                    = {Terminal bubble rise velocity in liquids},
  Author                   = {Jamialahmadi, M. and Branch, C. and M\"{u}ller-Steinhagen, J.},
  Journal                  = {Trans. Inst. Chem. Eng.},
  Year                     = {1994},
  Pages                    = {119-122},
  Volume                   = {72},

  Owner                    = {victor},
  Timestamp                = {2014.08.01}
}

@Article{Juutinen2003,
  Title                    = {{Major implication of the littoral zone for methane release from boreal lakes}},
  Author                   = {Juutinen, Sari and Alm, Jukka and Larmola, Tuula and Huttunen, Jari T. and Morero, Micaela and Martikainen, Pertti J. and Silvola, Jouko},
  Journal                  = {Global Biogeochemical Cycles},
  Year                     = {2003},

  Month                    = dec,
  Number                   = {4},
  Pages                    = {n/a--n/a},
  Volume                   = {17},

  Doi                      = {10.1029/2003GB002105},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Juutinen2003.pdf:pdf},
  ISSN                     = {08866236},
  Keywords                 = {http://dx.doi.org/10.1029/2003GB002105, doi:10.102},
  Url                      = {http://doi.wiley.com/10.1029/2003GB002105}
}

@Article{Lidstrom1984,
  Title                    = {{Seasonal study of methane oxidation in lake washington.}},
  Author                   = {Lidstrom, M E and Somers, L},
  Journal                  = {Applied and environmental microbiology},
  Year                     = {1984},

  Month                    = jun,
  Number                   = {6},
  Pages                    = {1255--60},
  Volume                   = {47},

  Abstract                 = {The distribution of methane and methane-oxidizing bacteria in the water column of Lake Washington was determined monthly for 1 year. The methane profiles were relatively constant, with little stratification and low concentrations (0.05 to 0.5 muM). The number of methane-oxidizing bacteria detected by a filter-plating method was routinely <1/ml throughout the water column, and no incorporation or oxidation of methane was detected by radioisotopic labeling, even after methane was added. However, samples taken from the sediment-water interface contained as much as 3 muM methane and 50 CFU of methane-oxidizing bacteria per ml and showed significant rates of methane oxidation and incorporation. To define the region of maximum activity more precisely, vertical profiles of the sediment were examined. The concentration of methane increased with depth to a maximum of 150 to 325 muM at 2.5 cm, and significant rates of methane oxidation were found within the top 2.5 cm. The apparent K(m)s for methane and oxygen were determined for samples from the top 1.0 cm of the sediment and found to be ca. 10 and 20 muM, respectively. Projected values for methane oxidation rates suggested that maximum methane oxidation occurred in the top 0.5 cm of the sediment.},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Appl. Environ. Microbiol.-1984-Lidstrom-1255-60.pdf:pdf},
  ISSN                     = {0099-2240},
  Pmid                     = {16346563},
  Url                      = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=240212\&tool=pmcentrez\&rendertype=abstract}
}

@Article{Liikanen2002,
  Title                    = {{Methane cycling in the sediment and water column of mid-boreal hyper-eutrophic Lake Kevaton, Finland}},
  Author                   = {Liikanen, A. and Huttunen, J. T. and Valli, K. and Martikainen, P. J.},
  Journal                  = {ARCHIV FUR HYDROBIOLOGIE},
  Year                     = {2002},
  Number                   = {4},
  Pages                    = {585--603},
  Volume                   = {154}
}

@Article{Liikanen2002a,
  Title                    = {Effects of temperature and oxygenavailability on greenhouse gas and nutrient dynamics in sediment of a eutrophic mid-boreal lake},
  Author                   = {Liikanen, Anu and Murtoniemi, Timo and Tanskanen, Heikki and V\"{a}is\"{a}nen, Tero and Martikainen, PerttiJ.},
  Journal                  = {Biogeochemistry},
  Year                     = {2002},
  Number                   = {3},
  Pages                    = {269-286},
  Volume                   = {59},

  Doi                      = {10.1023/A:1016015526712},
  ISSN                     = {0168-2563},
  Keywords                 = {Global warming potential; Greenhouse gas; Nutrient; Oxygen; Sediment; Temperature},
  Language                 = {English},
  Owner                    = {victor},
  Publisher                = {Kluwer Academic Publishers},
  Timestamp                = {2014.07.26},
  Url                      = {http://dx.doi.org/10.1023/A\%3A1016015526712}
}

@Article{Lopes2011,
  Title                    = {{Biogeochemical modelling of anaerobic vs . aerobic methane oxidation in a meromictic crater lake ( Lake Pavin , France )}},
  Author                   = {Lopes, F and Viollier, E and Thiam, A and Michard, G and Abril, G and Groleau, A and Carrias, F and Cedex, Talence and Pascal, Blaise},
  Year                     = {2011},
  Pages                    = {1919--1932},
  Volume                   = {26},

  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Lopes2011.pdf:pdf}
}

@Article{Lovley1986,
  Title                    = {{Model for the distribution of sulfate reduction and methanogenesis in freshwater sediments}},
  Author                   = {Lovley, Derek R. and Klug, Michael J.},
  Journal                  = {Geochimica et Cosmochimica Acta},
  Year                     = {1986},

  Month                    = jan,
  Number                   = {1},
  Pages                    = {11--18},
  Volume                   = {50},

  Abstract                 = {A model, based on the in situ physiological characteristics of methanogens and sulfate reducers, was developed to describe the distribution of methanogenesis and sulfate reduction in freshwater sediments. The model predicted the relative importance of methane production and sulfate reduction in lakes of various trophic status and generated profiles of sulfate, acetate, methanogenesis, and sulfate reduction comparable to the profiles that are expected based on field studies. The model indicated that at sulfate concentrations greater than 30$\mu$M a sulfate-reducing zone develops because sulfate reducers maintain acetate concentrations too low for methanogens to grow. At lower sulfate concentrations a methanogenic zone develops because the dual limitations of low sulfate concentrations and acetate consumption by methanogens prevents sulfate reducers from growing. The model and a compilation of previously published field data indicate that, within the reported range of sulfate concentrations, the relative importance of methanogenesis and sulfate reduction in freshwater sediments is primarily dependent upon the rates of organic matter decomposition.},
  Doi                      = {10.1016/0016-7037(86)90043-8},
  ISSN                     = {00167037},
  Url                      = {http://www.sciencedirect.com/science/article/pii/0016703786900438}
}

@Article{MacIntyre2010,
  Title                    = {{Buoyancy flux, turbulence, and the gas transfer coefficient in a stratified lake}},
  Author                   = {MacIntyre, Sally and Jonsson, Anders and Jansson, Mats and Aberg, Jan and Turney, Damon E. and Miller, Scott D.},
  Journal                  = {Geophysical Research Letters},
  Year                     = {2010},

  Month                    = dec,
  Number                   = {24},
  Pages                    = {n/a--n/a},
  Volume                   = {37},

  Doi                      = {10.1029/2010GL044164},
  File                     = {::},
  ISSN                     = {00948276},
  Keywords                 = {http://dx.doi.org/10.1029/2010GL044164, doi:10.102},
  Url                      = {http://doi.wiley.com/10.1029/2010GL044164}
}

@Article{Makhov1999,
  Title                    = {{Methane emission from lakes}},
  Author                   = {Makhov, G A and Bazhin, N M},
  Journal                  = {Chemosphere},
  Year                     = {1999},
  Number                   = {6},
  Pages                    = {1453--1459},
  Volume                   = {38},

  Abstract                 = {A physico-chemical model to describe methane and carbon dioxide emission from lakes was developed. The model describes the emission by diffusion, bubbles and plants. The intensity of the fluxes can be calculated either for total or particular emission in dependence on gas bubbles composition. It was found, that diffusional (Q) and bubble (J) fluxes depend on the methane molar ratio (X) in bubbles as follows: Q(CH4) ∽ X; Q(CO2) ∽ X(1 − X)Q(N2) ∽ (1 − X)J(CH4) ∽ X2(I − X)J(CO2) ∽ X2(l − X)2J(N2) ∽ X. The model allows to estimate the role of the methane oxidation by atmospheric oxygen in the total methane flux. It was shown, that the methane oxidation does not influence much methane fluxes to the atmosphere for most of the experimentally observed situations. },
  Annote                   = {Degradation Processes in the Environment },
  Doi                      = {http://dx.doi.org/10.1016/S0045-6535(98)00547-5},
  ISSN                     = {0045-6535},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S0045653598005475}
}

@Article{mcginnis2006,
  Title                    = {Fate of rising methane bubbles in stratified waters: How much methane reaches the atmosphere?},
  Author                   = {McGinnis, D. F. and Greinert, J. and Artemov, Y. and Beaubien, S. E. and Wüest, A.},
  Journal                  = {Journal of Geophysical Research: Oceans},
  Year                     = {2006},
  Number                   = {C9},
  Pages                    = {n/a--n/a},
  Volume                   = {111},

  __markedentry            = {[victor:]},
  Abstract                 = {There is growing concern about the transfer of methane originating from water bodies to the atmosphere. Methane from sediments can reach the atmosphere directly via bubbles or indirectly via vertical turbulent transport. This work quantifies methane gas bubble dissolution using a combination of bubble modeling and acoustic observations of rising bubbles to determine what fraction of the methane transported by bubbles will reach the atmosphere. The bubble model predicts the evolving bubble size, gas composition, and rise distance and is suitable for almost all aquatic environments. The model was validated using methane and argon bubble dissolution measurements obtained from the literature for deep, oxic, saline water with excellent results. Methane bubbles from within the hydrate stability zone (typically below ∼500 m water depth in the ocean) are believed to form an outer hydrate rim. To explain the subsequent slow dissolution, a model calibration was performed using bubble dissolution data from the literature measured within the hydrate stability zone. The calibrated model explains the impressively tall flares (>1300 m) observed in the hydrate stability zone of the Black Sea. This study suggests that only a small amount of methane reaches the surface at active seep sites in the Black Sea, and this only from very shallow water areas (<100 m). Clearly, the Black Sea and the ocean are rather effective barriers against the transfer of bubble methane to the atmosphere, although substantial amounts of methane may reach the surface in shallow lakes and reservoirs.},
  Doi                      = {10.1029/2005JC003183},
  ISSN                     = {2156-2202},
  Keywords                 = {bubble model, hydrate stability zone, methane},
  Owner                    = {victor},
  Timestamp                = {2014.08.01},
  Url                      = {http://dx.doi.org/10.1029/2005JC003183}
}

@Article{Megard01011984,
  Title                    = {{Kinetics of oxygenic photosynthesis in planktonic algae}},
  Author                   = {Megard, R O and Tonkyn, D W and Senft, W H},
  Journal                  = {Journal of Plankton Research},
  Year                     = {1984},
  Number                   = {2},
  Pages                    = {325--337},
  Volume                   = {6},

  Abstract                 = {The production of oxygen by algae during photosynthesis at steady state depends on irradiance according to a classical equation for the activity of enzymes inhibited by high concentrations of substrate. The equation is derived from a kinetic analysis of plausible reactions between photons and plant pigments, and it predicts that the inhibition of oxygenic photosynthesis often observed at full sunlight is an intrinsic property of these reactions. The equation contains three parameters, which are all sensitive to temperature. It provides a mechanistic basis for analysing adaptive responses of oxygenic photosynthesis, but a more complex theory will be required to account for the effect of irradiance on the assimilation of carbon during photosynthesis.},
  Doi                      = {10.1093/plankt/6.2.325},
  Url                      = {http://plankt.oxfordjournals.org/content/6/2/325.abstract}
}

@Article{Michmerhuizen1996,
  Title                    = {{Potential methane emission from north-temperate lakes following ice melt}},
  Author                   = {Michmerhuizen, Catherine M. and Striegl, Robert G. and Mcdonald, Michael E.},
  Journal                  = {Limnology and Oceanography},
  Year                     = {1996},
  Number                   = {5},
  Pages                    = {985--991},
  Volume                   = {41},

  Doi                      = {10.4319/lo.1996.41.5.0985},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Michmerhuizen\_etal1996.pdf:pdf},
  ISSN                     = {00243590},
  Url                      = {http://www.aslo.org/lo/toc/vol\_41/issue\_5/0985.html}
}

@Article{Misra2010,
  Title                    = {{Modeling the depletion of dissolved oxygen in a lake due to submerged macrophytes}},
  Author                   = {Misra, A K},
  Journal                  = {Nonlinear Analysis: Modelling and Control},
  Year                     = {2010},
  Number                   = {2},
  Pages                    = {185--198},
  Volume                   = {15},

  Url                      = {http://www.mii.lt/NA/}
}

@Book{Omstedt2011,
  Title                    = {{Guide to Process Based Modeling of Lakes and Coastal Seas}},
  Author                   = {Omstedt, Anders},
  Editor                   = {Blondel, Philippe},
  Publisher                = {Springer, Praxis},
  Year                     = {2011},

  Doi                      = {10.1007/978-3-642-17728-6},
  Pages                    = {258}
}

@Article{Panganiban1979,
  Title                    = {{Oxidation of methane in the absence of oxygen in lake water samples.}},
  Author                   = {Panganiban, A T and Patt, T E and Hart, W and Hanson, R S},
  Journal                  = {Applied and environmental microbiology},
  Year                     = {1979},

  Month                    = feb,
  Number                   = {2},
  Pages                    = {303--9},
  Volume                   = {37},

  Abstract                 = {Methane was oxidized to carbon dioxide in the absence of oxygen by water samples from Lake Mendota, Madison, Wis. The anaerobic oxidation of methane did not result in the assimilation of carbon from methane into material precipitable by cold 10\% trichloracetic acid. Only samples taken at the suface of the sediment of Lake Mendota were capable of catalyzine the anaerobic oxidation of methane. The rate of methane oxidation in the presence of oxygen was highest in samples taken from near the thermocline. Of the radioactive methane oxidized, 30 to 60\% was assimilated into material precipitable by cold 10\% trichloroacetic acid during aerobic incubation of the samples. These data support the conclusion that two distinct groups of methane-oxidizing organisms occur in stratifield lakes. Enrichments with acetate and methane as the sole sources of carbon and energy and sulfate as the electron acceptor resulted in the growth of bacteria that oxidize methane. Sulfate, acetate, and methane were all required for growth of enrichments. Acetate was not oxidized to carbon dioxide but was assimilated by cells. Methane was not assimilated but was oxidized to carbon dioxide in the absence of air.},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Panganiban\_etal1979.pdf:pdf},
  ISSN                     = {0099-2240},
  Keywords                 = {Acetates,Acetates: metabolism,Anaerobiosis,Bacteria,Bacteria: metabolism,Carbon Dioxide,Carbon Dioxide: biosynthesis,Fresh Water,Methane,Methane: metabolism,Oxidation-Reduction,Sulfates,Sulfates: metabolism,Water Microbiology},
  Pmid                     = {434809},
  Url                      = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=243205\&tool=pmcentrez\&rendertype=abstract}
}

@Misc{Pimenov2010,
  Title                    = {{Methane formation and oxidation in the meromictic oligotrophic Lake Gek-Gel (Azerbaijan)}},

  Author                   = {Pimenov, N. V. and Kallistova, A. Yu. and Rusanov, I. I. and Yusupov, S. K. and Montonen, L. and Jurgens, G. and M\"{u}nster, U. and Nozhevnikova, A. N. and Ivanov, M. V.},
  Year                     = {2010},

  Abstract                 = {The production and oxidation of methane and diversity of culturable aerobic methanotrophic bacteria in the water column and upper sediments of the meromictic oligotrophic Lake Gek Gel (Azerbaijan) were studied by radioisotope, molecular, and microbiological techniques. The rate of methane oxidation was low in the aerobic mixolimnion, increased in the chemocline, and peaked at the depth where oxygen was detected in the water column. Aerobic methanotrophic bacteria of type II belonging to the genus Methylocys tis were identified in enrichment cultures obtained from the chemocline. Methane oxidation in the anaerobic water of the monimolimnion was much more intense than in the aerobic zone. However, below 29–30 m methane concentration increased and reached 68 $\mu$M at the bottom. The highest rate of methane oxidation under anaerobic conditions was revealed in the upper layer of bottom sediments. The rate of methane oxida tion significantly exceeding that of methane production suggests a deep source of methane in this lake.},
  Booktitle                = {Microbiology},
  Doi                      = {10.1134/S0026261710020177},
  ISSN                     = {0026-2617},
  Pages                    = {247--252},
  Volume                   = {79}
}

@Article{Poole2009,
  Title                    = {{Photo-electric Measurements of Submarine Illumination throughout the Year}},
  Author                   = {Poole, H. H. and Atkins, W. R. G.},
  Journal                  = {Journal of the Marine Biological Association of the United Kingdom},
  Year                     = {2009},

  Month                    = may,
  Number                   = {01},
  Pages                    = {297},
  Volume                   = {16},

  Doi                      = {10.1017/S0025315400029829},
  ISSN                     = {0025-3154},
  Language                 = {English},
  Publisher                = {Cambridge University Press},
  Url                      = {http://journals.cambridge.org/abstract\_S0025315400029829}
}

@Article{bg-8-1925-2011,
  Title                    = {{Barriers to predicting changes in global terrestrial methane fluxes: analyses using CLM4Me, a methane biogeochemistry model integrated in CESM}},
  Author                   = {Riley, W J and Subin, Z M and Lawrence, D M and Swenson, S C and Torn, M S and Meng, L and Mahowald, N M and Hess, P},
  Journal                  = {Biogeosciences},
  Year                     = {2011},
  Number                   = {7},
  Pages                    = {1925--1953},
  Volume                   = {8},

  Doi                      = {10.5194/bg-8-1925-2011},
  Url                      = {http://www.biogeosciences.net/8/1925/2011/}
}

@Article{Romero1996,
  Title                    = {{Simulation of the effect of methane bubble plumes on vertical mixing in Mono Lake}},
  Author                   = {Romero, Jos\'{e}R. and Patterson, JohnC. and Melack, JohnM.},
  Journal                  = {Aquatic Sciences},
  Year                     = {1996},
  Number                   = {3},
  Pages                    = {210--223},
  Volume                   = {58},

  Doi                      = {10.1007/BF00877509},
  ISSN                     = {1015-1621},
  Keywords                 = {Methane ebullition; vertical mixing; hypolimnetic },
  Publisher                = {Birkh\"{a}user-Verlag},
  Url                      = {http://dx.doi.org/10.1007/BF00877509}
}

@Article{Rucinski2010,
  Title                    = {{A Simple 1-Dimensional, Climate Based Dissolved Oxygen Model for the Central Basin of Lake Erie}},
  Author                   = {Rucinski, Daniel K and Beletsky, Dmitry and DePinto, Joseph V and Schwab, David J and Scavia, Donald},
  Journal                  = {Journal of Great Lakes Research},
  Year                     = {2010},

  Month                    = sep,
  Number                   = {3},
  Pages                    = {465--476},
  Volume                   = {36},

  Doi                      = {10.1016/j.jglr.2010.06.002},
  ISSN                     = {0380-1330},
  Publisher                = {International Association for Great Lakes Research},
  Url                      = {http://www.bioone.org/doi/abs/10.1016/j.jglr.2010.06.002}
}

@Article{Rudd1976,
  Title                    = {{Factors controlling methane oxidation in shield lakes : The role of nitrogen fixation and oxygen concentration}},
  Author                   = {Rudd, John W M and Furutani, Akira and Flett, R J and Hamilton, R D},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {1976},
  Number                   = {3},
  Pages                    = {357--364},
  Volume                   = {21},

  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Rudd\_etal1976.pdf:pdf}
}

@Article{Rudd1978,
  Title                    = {{Methane cycling in a eutrophic shield lake and its effects on whole lake metabolism}},
  Author                   = {Rudd, John W M and Hamilton, R D},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {1978},
  Number                   = {2},
  Pages                    = {337--348},
  Volume                   = {23},

  Abstract                 = {The methane cycle of an artificially eutrophic shield lake is considered by relating in situ rates of production to rates of oxidation and evasion. Mcthanc production rates for oxygenated an d anoxic seclimcnts wcrc quite consistant throllghout the year, ranging from -1 .O to - 10 mmol rnw2 sediment d-l. Methane oxidation rates wcrc highly variable (0.02-32 mmol me2 lake surface d-‘) as were evasion rates (O.\&SO mmol m+ lake surface d-l). Oxidation and evasion rates both peaked during fall overturn and were very low during the remainder of the year. Methane production was important in regenerating carbon from sediments. Fifty-five percent of’ total carbon input was regcncratcd as methane during 1 year and 36\% of this total carbon inpllt was rccyclcd by methane oxidation. Methane oxidation was not an important source of carbon dioxide for primary producers or of seston for secondary grazers during the summer. Dluing some winters production of particlllate carbon by mcthanc oxidizers may have been an important source of seston for grazers. Mcthanc oxidation was the most important contributor to the dcveIopment of total lake anoxia unclcr ice cover.},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Rudd and Hamilton 1978.pdf:pdf}
}

@Article{Scandella2011,
  Title                    = {{A conduit dilation model of methane venting from lake sediments}},
  Author                   = {Scandella, Benjamin P and Varadharajan, Charuleka and Hemond, Harold F and Ruppel, Carolyn and Juanes, Ruben},
  Journal                  = {Geophysical Research Letters},
  Year                     = {2011},
  Number                   = {6},
  Pages                    = {n/a----n/a},
  Volume                   = {38},

  Abstract                 = {Methane is a potent greenhouse gas, but its effects on Earth's climate remain poorly constrained, in part due to uncertainties in global methane fluxes to the atmosphere. An important source of atmospheric methane is the methane generated in organic-rich sediments underlying surface water bodies, including lakes, wetlands, and the ocean. The fraction of the methane that reaches the atmosphere depends critically on the mode and spatiotemporal characteristics of free-gas venting from the underlying sediments. Here we propose that methane transport in lake sediments is controlled by dynamic conduits, which dilate and release gas as the falling hydrostatic pressure reduces the effective stress below the tensile strength of the sediments. We test our model against a four-month record of hydrostatic load and methane flux in Upper Mystic Lake, Mass., USA, and show that it captures the complex episodicity of methane ebullition. Our quantitative conceptualization opens the door to integrated modeling of methane transport to constrain global methane release from lakes and other shallow-water, organic-rich sediment systems, and to assess its climate feedbacks.},
  Doi                      = {10.1029/2011GL046768},
  ISSN                     = {1944-8007},
  Keywords                 = { ebullition, effective stress, freshwater methane, gas conduits, methane flux,greenhouse gas},
  Url                      = {http://dx.doi.org/10.1029/2011GL046768}
}

@Article{Schilder2013,
  Title                    = {{Spatial heterogeneity and lake morphology affect diffusive greenhouse gas emission estimates of lakes}},
  Author                   = {Schilder, Jos and Bastviken, David and van Hardenbroek, Maarten and Kankaala, Paula and Rinta, P\"{a}ivi and St\"{o}tter, Tabea and Heiri, Oliver},
  Journal                  = {Geophysical Research Letters},
  Year                     = {2013},
  Number                   = {21},
  Pages                    = {5752--5756},
  Volume                   = {40},

  Abstract                 = {Most estimates of diffusive flux (F) of methane (CH4) and carbon dioxide (CO2) from lakes are based on single-point flux chamber measurements or on piston velocity (k) modeled from wind speed and single-point measurements of surface water gas concentrations (Caq). We analyzed spatial variability of F of CH4 and CO2, as well as Caq and k in 22 European lakes during late summer. F and k were higher in the lake centers, leading to considerable bias when extrapolating single-point chamber measurements to whole-lake estimates. The ratio of our empirical k estimates to wind speed-modeled k was related to lake size and shape, suggesting a lake morphology effect on the relationship between wind speed and k. This indicates that the error inherent to established wind speed models can be reduced by determining k and Caq at multiple sites on lakes to calibrate wind speed-modeled k to the local system.},
  Doi                      = {10.1002/2013GL057669},
  ISSN                     = {1944-8007},
  Keywords                 = { carbon dioxide emission, diffusive flux, greenhouse gases, lakes,methane emission},
  Url                      = {http://dx.doi.org/10.1002/2013GL057669}
}

@Article{Schubert2010,
  Title                    = {{Oxidation and emission of methane in a monomictic lake (Rotsee, Switzerland)}},
  Author                   = {Schubert, C. J. and Lucas, F. S. and Durisch-Kaiser, E. and Stierli, R. and Diem, T. and Scheidegger, O. and Vazquez, F. and M\"{u}ller, B.},
  Journal                  = {Aquatic Sciences},
  Year                     = {2010},

  Month                    = jun,
  Number                   = {4},
  Pages                    = {455--466},
  Volume                   = {72},

  Doi                      = {10.1007/s00027-010-0148-5},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/2010\_schubert.pdf:pdf},
  ISBN                     = {0002701001485},
  ISSN                     = {1015-1621},
  Keywords                 = {emission \'{a},lakes \'{a},methane oxidation \'{a} methane,methane oxidizing bacteria \'{a},redox and flux calculation},
  Url                      = {http://link.springer.com/10.1007/s00027-010-0148-5}
}

@Article{Schulz1997,
  Title                    = {{Temperature dependence of methane production from different precursors in a profundal sediment (Lake Constance)}},
  Author                   = {Schulz, Silke and Matsuyama, Hidetoshi and Conrad, Ralf},
  Journal                  = {FEMS Microbiology Ecology},
  Year                     = {1997},
  Number                   = {3},
  Pages                    = {207--213},
  Volume                   = {22},

  Abstract                 = {The profundal sediment of Lake Constance has a constant temperature of 4°C. Incubation at temperatures increasing in steps of 2–3°C between 2 and 49°C resulted in increasing CH4 production rates that exhibited a shoulder at 25°C with rates of about 3 nmol h−1 ml−1, a maximum at 34°C with rates of about 18 nmol h−1 ml−1, and then declined to low rates again. Production of 14CH4 from [2-14C]acetate occurred at all temperatures. It increased with temperature reaching a maximum at 36–40°C, and then decreased rapidly. Production of 14CH4 from H14CO3−, on the other hand, was only detectable at temperatures higher than 22°C. It then increased rapidly, reached a maximum at 30°C and then decreased again. The absence of H2/CO2-dependent CH4 production at low temperature was probably due to substrate limitation, since addition of H2/CO2 at 4°C increased the percentage of H2/CO2-dependent methanogenesis from undetectable levels to about 100\%. Addition of cellulose had only a minor stimulatory effect on the formation of 14CH4 from H14CO3−, indicating that H2 formation from cellulose was limited by the low temperature. The addition of H2/CO2 also resulted in increased incorporation of H14CO3− into acetate, indicating the operation of chemolithotrophic homoacetogenesis. Incubation of sediment at temperatures higher than 35°C resulted in increased production of acetate, lactate, propionate, butyrate, caproate and isopropanol. At 45°C production rates reached values of <2 nmol h−1 ml−1, except acetate production which reached a rate of about 28 nmol h−1 ml−1. Obviously, fermentation of organic matter was enhanced at these temperatures and was not balanced by further degradation of the fermentation products to CH4. Our results demonstrate a tremendous metabolic capacity of the permanently cold profundal sediment at much higher temperatures, but apparently to a different extent for the different physiological groups of anaerobic bacteria.},
  Doi                      = {10.1111/j.1574-6941.1997.tb00372.x},
  ISSN                     = {1574-6941},
  Keywords                 = { Acetate, Fatty acid, Fermentation, Homoacetogenesis, Hydrogen, Methanogenesis, Syntrophy,Temperature},
  Publisher                = {Blackwell Publishing Ltd},
  Url                      = {http://dx.doi.org/10.1111/j.1574-6941.1997.tb00372.x}
}

@Article{Stefan1994,
  Title                    = {{Dissolved oxygen model for regional lake analysis}},
  Author                   = {Stefan, Heinz G and Fang, Xing},
  Journal                  = {Ecological Modelling},
  Year                     = {1994},
  Number                   = {1–3},
  Pages                    = {37--68},
  Volume                   = {71},

  Abstract                 = {A deterministic, one-dimensional, unsteady dissolved oxygen (D.O.) model has been formulated to simulate summer D.O. conditions (stratification) in a wide raange of lakes of the north central United States and to study potential impacts of global climate change. The simulation includes contributions by photosynthesis, plant respiration, reaeration, biochemical oxygen demand (BOD) and sedimentary oxygen demand (SOD) as source and sink terms. The one-dimensional vertical oxygen transport equation is solved in conjunction with the heat transport equation in daily time steps beginning 1 March and ending 31 October. Lake morphometry, trophic status and daily weather parameters have to be specified as input, and daily profiles of water temperature and dissolved oxygen are obtained as output. The model finds the onset of summer-stratification from initially isothermal and constant D.O. conditions. Trophic status is related to Secchi depth, phytoplankton ( chlorophyll-a) concentrations, \{BOD\} and SOD. Field data from seven lakes (11 years) have been used to calibrate and validate the D.O. model. The simulations for dimictic lakes with strong stratification are better than for weakly stratified polymictic lakes, i.e. the model works better for deep lakes than for shallow lakes. The average standard errors for calibration and validation are 1.4 and 1.9 mg D.O.1−1, respectively. The temperature simulations, especially the mixed-layer depth, affect the D.O. simulation results. A sensitivity analysis to model coefficients was also conducted. The model is most sensitive to sedimentary oxygen demand (SOD). Twenty seven classes of lakes (3 depths × 3 areas × 3 trophic states) in the north central U.S. were analyzed with the model. Simulated mean daily dissolved oxygen concentrations in the epilimnion are near saturation, those in the hypolimnion vary considerably depending particularly on length of time since the onset of stratification and the sedimentary oxygen demand. },
  Doi                      = {http://dx.doi.org/10.1016/0304-3800(94)90075-2},
  ISSN                     = {0304-3800},
  Url                      = {http://www.sciencedirect.com/science/article/pii/0304380094900752}
}

@Article{Stepanenko2014,
  Title                    = {{Simulation of surface energy fluxes and stratification of a small boreal lake by a set of one-dimensional models}},
  Author                   = {Stepanenko, V and J\"{o}hnk, KD and Machulskaya, E},
  Journal                  = {Tellus A},
  Year                     = {2014},
  Pages                    = {1--18},
  Volume                   = {1},

  Abstract                 = {Five one-dimensional (1D) lake models were run for the open water season in 2006 for Lake Valkea-Kotinen (Finland) using on-lake measured meteorological forcing. The model results were validated using measurements of water temperature and of eddy covariance (EC) fluxes. The surface temperature is satisfactorily simulated by all models showing slight overestimation (by 0.1-1.1 degrees C). Both sensible and latent heat fluxes are positively biased in respect to EC data, consistent with earlier studies. However, correlation coefficients between EC-fluxes and those simulated are relatively high ranging from 0.55 to 0.74. The skill to simulate vertical temperature profiles by different models is assessed as well. It is found that the lake models underestimate the EC-derived surface drag coefficient, however providing realistic temperature profiles. It is argued that the real momentum flux from the atmosphere is larger than simulated, however it is split up between the wave development and the acceleration of lake currents. Adopting the simple parameterisation for momentum flux partitioning in one of the models showed that this mechanism can be significant. Finally, the effect of including the lake bathymetry data in k-epsilon models was the drastic overheating of water below the thermocline. This is likely to be caused by omitting the heat flux at the lake margins. Thus, the parameterisation of heat flux at the lake's margins should be included in the models; otherwise it is recommended to neglect bathymetry effects for such small water bodies as the Lake Valkea-Kotinen.},
  Doi                      = {10.3402/tellusa.v66.21389},
  File                     = {:home/victor/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Stepanenko, J\"{o}hnk, Machulskaya - 2014 - Simulation of surface energy fluxes and stratification of a small boreal lake by a set of one-d.pdf:pdf},
  ISBN                     = {0280-6495},
  Keywords                 = {lakes,numerical modelling,stratification,surface fluxes},
  Url                      = {http://www.tellusa.net/index.php/tellusa/article/view/21389}
}

@Article{Striegl1998,
  Title                    = {{Hydrologic influence on methane and carbon dioxide dynamics at two north-central Minnesota lakes}},
  Author                   = {Striegl, Robert G and Michmerhuizen, Catherine M and Survey, U S Geological},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {1998},
  Number                   = {7},
  Pages                    = {1519--1529},
  Volume                   = {43},

  Abstract                 = {Annual emissions of (CH4 + CO2) to the atmosphere were proportional to net hydrologic inputs of C, mostly by groundwater, at two lakes in the Shingobec River watershed in north-central Minnesota. Williams Lake (WL), a closed basin lake near the top of the watershed, had a hydraulic residence time of 2-4 yr and groundwater exchange of about +2 mol dissolved inorganic carbon (DIC) and -0.1 mol dissolved organic carbon (DOC) m-2 lake area yr-1. The Shingobee River flows through Shingobee Lake (SL) that had a hydraulic residence of 0.3-0.4 yr and received net groundwater plus surface-water inputs of +5.3 to +7.3 mol DIC and fewer than + 1.3 mol (DOC + particulate organic carbon) m-2 yr-1. Approximately 60-80\% of net annual C input to SL was from groundwater. Lake storage of CH4 and CO2 was greatest in late winter, with maximum emissions to the atmosphere immediately following ice melt. The lakes emitted CH4 continuously during open water, having annual losses of -1.6 mol CH4 m-2 yr-1 at WL and -1.9 mol CH4 m-2 yr-1 at SL. Although the WL epilimnion was CO2 depleted throughout summer, net annual CO2 exchange with the atmosphere was near zero because springtime emission offset summertime uptake. CO2 supersaturation resulted in emission of -8.0 mol CO2 m-2 yr-l at SL.},
  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Striegl\_etal1998.pdf:pdf}
}

@Article{Tranvik_etal2009,
  Title                    = {{Lakes and reservoirs as regulators of carbon cycling and climate}},
  Author                   = {Tranvik, Lars J and Others},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {2009},
  Number                   = {6},
  Pages                    = {2298--2314},
  Volume                   = {54}
}

@Article{Utsumi1998,
  Title                    = {{Oxidation of dissolved methane in a eutrophic, shallow lake: Lake Kasumigaura, Japan}},
  Author                   = {Utsumi, Motoo and Yulihiro, Nojiri and Nakamura, Takeshi and Nozawa, Takeshi and Otsuki, Akira and Seki, Humitake},
  Journal                  = {Limnol. Oceanogr.},
  Year                     = {1998},
  Number                   = {3},
  Pages                    = {471--480},
  Volume                   = {43},

  File                     = {:home/victor/Files/Библиотека/Гидрология/Lakes\&oceans/Метан\_в\_водоемах/Nakamura0471.pdf:pdf}
}

@Article{Walker1986,
  Title                    = {{Model for Sediment Oxygen Demand in Lakes}},
  Author                   = {Walker, Robert R. and Snodgrass, William J.},
  Journal                  = {Journal of Environmental Engineering},
  Year                     = {1986},

  Month                    = feb,
  Number                   = {1},
  Pages                    = {25--43},
  Volume                   = {112},

  Abstract                 = {A model for sediment oxygen demand (SOD; g/m2-d) in lakes is hypothesized and developed for aerobic (BSOD) and chemical (CSOD) components. The CSOD uses first order kinetics while BSOD uses Monod kinetics with respect to oxygen concentration. The model is calibrated using laboratory data for sediments from 4 water bodies—one is heavily impacted by eutrophication and wastewater discharges while the other 3 lay on the forested Precambrian shield. The model shows excellent agreement with the laboratory data for all water bodies (generally at the 1\% level of significance) for temperatures between 4 °C and 22 °C. The model implies that CSOD is diffusion controlled at one temperature, but strongly influenced by anaerobic biological processes over a range of temperatures. Future research should aim to incorporate overlying water velocity and sediment biodecomposability into kinetic expressions to complete model development.},
  Doi                      = {10.1061/(ASCE)0733-9372(1986)112:1(25)},
  ISSN                     = {0733-9372},
  Keywords                 = {Lakes,Oxygen demand,Sediment},
  Language                 = {en},
  Publisher                = {American Society of Civil Engineers},
  Url                      = {http://ascelibrary.org/doi/abs/10.1061/(ASCE)0733-9372(1986)112:1(25)}
}

@Article{Walter2008,
  Title                    = {{Methane production and bubble emissions from arctic lakes: Isotopic implications for source pathways and ages}},
  Author                   = {Walter, K M and Chanton, J P and Chapin, F S and Schuur, E A G and Zimov, S A},
  Journal                  = {Journal of Geophysical Research: Biogeosciences},
  Year                     = {2008},
  Number                   = {G3},
  Pages                    = {n/a----n/a},
  Volume                   = {113},

  Abstract                 = {This study reports an atmospheric methane (CH4) source term previously uncharacterized regarding strength and isotopic composition. Methane emissions from 14 Siberian lakes and 9 Alaskan lakes were characterized using stable isotopes (13C and D) and radiocarbon (14C) analyses. We classified ebullition (bubbling) into three categories (background, point sources, and hot spots) on the basis of fluxes, major gas concentrations, and isotopic composition. Point sources and hot spots had a strong association with thermokarst (thaw) erosion because permafrost degradation along lake margins releases ancient organic matter into anaerobic lake bottoms, fueling methanogenesis. With increasing ebullition rate, we observed increasing CH4 concentration of greater radiocarbon age, depletion of 13CCH4, and decreasing bubble N2 content. Microbial oxidation of methane was observed in bubbles that became trapped below and later within winter lake ice; however, oxidation appeared insignificant in bubbles sampled immediately after release from sediments. Methanogenic pathways differed among the bubble sources: CO2 reduction supported point source and hot spot ebullition to a large degree, while acetate fermentation appeared to contribute to background bubbling. To provide annual whole-lake and regional CH4 isofluxes for the Siberian lakes, we combined maps of bubble source distributions with long-term, continuous flux measurements and isotopic composition. In contrast to typical values used in inverse models of atmospheric CH4 for northern wetland sources ($\delta$13CCH4 = −58‰, 14C age modern), which have not included northern lake ebullition as a source, we show that this large, new source of high-latitude CH4 from lakes is isotopically distinct ($\delta$13CCH4 = −70‰, 14C age 16,500 years, for North Siberian lakes).},
  Doi                      = {10.1029/2007JG000569},
  ISSN                     = {2156-2202},
  Keywords                 = { ebullition, isotopes, methane, thermokarst,arctic lakes},
  Url                      = {http://dx.doi.org/10.1029/2007JG000569}
}

@Article{Walter15072007,
  Title                    = {{Methane bubbling from northern lakes: present and future contributions to the global methane budget}},
  Author                   = {Walter, Katey M and Smith, Laurence C and {Stuart Chapin}, F},
  Journal                  = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
  Year                     = {2007},
  Number                   = {1856},
  Pages                    = {1657--1676},
  Volume                   = {365},

  Abstract                 = {Large uncertainties in the budget of atmospheric methane (CH4) limit the accuracy of climate change projections. Here we describe and quantify an important source of CH4—point-source ebullition (bubbling) from northern lakes—that has not been incorporated in previous regional or global methane budgets. Employing a method recently introduced to measure ebullition more accurately by taking into account its spatial patchiness in lakes, we estimate point-source ebullition for 16 lakes in Alaska and Siberia that represent several common northern lake types: glacial, alluvial floodplain, peatland and thermokarst (thaw) lakes. Extrapolation of measured fluxes from these 16 sites to all lakes north of 45° N using circumpolar databases of lake and permafrost distributions suggests that northern lakes are a globally significant source of atmospheric CH4, emitting approximately 24.2±10.5 Tg CH4 yr−1. Thermokarst lakes have particularly high emissions because they release CH4 produced from organic matter previously sequestered in permafrost. A carbon mass balance calculation of CH4 release from thermokarst lakes on the Siberian yedoma ice complex suggests that these lakes alone would emit as much as approximately 49 000 Tg CH4 if this ice complex was to thaw completely. Using a space-for-time substitution based on the current lake distributions in permafrost-dominated and permafrost-free terrains, we estimate that lake emissions would be reduced by approximately 12\% in a more probable transitional permafrost scenario and by approximately 53\% in a ‘permafrost-free’ Northern Hemisphere. Long-term decline in CH4 ebullition from lakes due to lake area loss and permafrost thaw would occur only after the large release of CH4 associated thermokarst lake development in the zone of continuous permafrost.},
  Doi                      = {10.1098/rsta.2007.2036},
  Url                      = {http://rsta.royalsocietypublishing.org/content/365/1856/1657.abstract}
}

@Article{Walter2006,
  Title                    = {{Methane bubbling from Siberian thaw lakes as a positive feedback to climate warming}},
  Author                   = {Walter, K M and Zimov, S A and Chanton, J P and Verbyla, D and Chapin, F S},
  Journal                  = {Nature},
  Year                     = {2006},

  Month                    = sep,
  Number                   = {7107},
  Pages                    = {71--75},
  Volume                   = {443},

  Annote                   = {10.1038/nature05040},
  ISSN                     = {0028-0836},
  Url                      = {http://dx.doi.org/10.1038/nature05040}
}

@Article{Wanninkhof2003,
  Title                    = {{Gas transfer velocities measured at low wind speed over a lake}},
  Author                   = {Wanninkhof, Rik},
  Year                     = {2003},
  Number                   = {3},
  Pages                    = {1010--1017},
  Volume                   = {48},

  File                     = {::}
}

@Article{West2008,
  Title                    = {Time-dependent morphology of thaw lakes and taliks in deep and shallow ground ice},
  Author                   = {West, J. J. and Plug, L. J.},
  Journal                  = {Journal of Geophysical Research: Earth Surface},
  Year                     = {2008},
  Number                   = {F1},
  Pages                    = {n/a--n/a},
  Volume                   = {113},

  Abstract                 = {The shape and depth of thaw lake basins depends on lake age, on whether the talik (thaw bulb) is at steady state, and on the distribution of ice in the ground. To investigate implications of this broad hypothesis, we use a numerical model of conductive heat transfer, phase change, and thaw subsidence of ice-rich sediment beneath a lake in cross section. For ground thermal properties with lake temperatures and dimensions consistent with measurements, modeled talik depth approximately increases with except in lakes in deep ground ice which deepen more rapidly because of consolidation on thawing. In deep ground ice environments, basins achieve depths of ≈20 m in ≈5 ka. Expanding lakes with disequilibrium taliks have deep basins with broad, 100+ m wide, inclined margins. In shallow ground ice settings (either original epigenetic ice or in permafrost that has reformed in drained basins), lakes are <3 m deep and flat bottomed. Unaffected by preexisting topography and ground ice variations, first-generation lakes in deep ground ice are rounder and grow larger in area than later-generation lakes. These predictions are consistent with GPS, sonar, and remote sensing measurements of bathymetry and plan view shape of first- and later-generation lakes in substrates with deep syngenetic ground ice (Pleistocene loess, northern Seward Peninsula, Alaska) and shallow epigenetic ice (Yukon Arctic coastal plain).},
  Doi                      = {10.1029/2006JF000696},
  ISSN                     = {2156-2202},
  Keywords                 = {permafrost, thaw lakes, thermokarst},
  Owner                    = {victor},
  Timestamp                = {2014.07.26},
  Url                      = {http://dx.doi.org/10.1029/2006JF000696}
}

@Article{White2012,
  Title                    = {{Causal mechanisms of the deep chlorophyll maximum in Lake Superior: A numerical modeling investigation}},
  Author                   = {White, Brooke and Matsumoto, Katsumi},
  Journal                  = {Journal of Great Lakes Research},
  Year                     = {2012},
  Number                   = {3},
  Pages                    = {504--513},
  Volume                   = {38},

  Abstract                 = {The deep chlorophyll maximum (DCM) is a near ubiquitous feature in Lake Superior during the summer stratified season. Previous studies have elucidated observable characteristics of the \{DCM\} in Lake Superior but the physical and biological mechanisms controlling the creation and maintenance of the \{DCM\} remained unclear. We use a three-dimensional hydrodynamic model of Lake Superior coupled to an ecological model to perform sensitivity runs exploring the influence of photoadaptation, photoinhibition, zooplankton grazing, and phytoplankton sinking on the vertical distribution of chlorophyll in the water column. The role of a nutricline in determining the presence and nature of the \{DCM\} is also explored. The presence of the \{DCM\} is dependent upon the presence of thermal stratification in the model. The sensitivity runs reveal that photoadaptation plays a primary role in determining the depth of the \{DCM\} in the model while zooplankton grazing and phytoplankton sinking affected the magnitude but not the presence or depth of the DCM. Photoinhibition showed negligible effects on chlorophyll concentration distribution. The presence of a nutricline in the model is also a necessary condition for the formation of the \{DCM\} and it influences both the depth and magnitude of the DCM. },
  Doi                      = {http://dx.doi.org/10.1016/j.jglr.2012.05.001},
  ISSN                     = {0380-1330},
  Keywords                 = {Lake superior},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S0380133012000913}
}

@Article{Yamamoto2009,
  Title                    = {Modeling of methane bubbles released from large sea-floor area: Condition required for methane emission to the atmosphere},
  Author                   = {Yamamoto, A. and Yamanaka, Y. and Tajika, E. and A. Yamamoto, Y. Yamanaka, E. Tajika},
  Journal                  = {Earth and Planetary Science Letters},
  Year                     = {2009},

  Doi                      = {10.1016/j.epsl.2009.05.026}
}

@Article{Zheng2002,
  Title                    = {Modeling gas dissolution in deepwater oil/gas spills },
  Author                   = {Li Zheng and Poojitha D Yapa},
  Journal                  = {Journal of Marine Systems },
  Year                     = {2002},
  Number                   = {4},
  Pages                    = {299 - 309},
  Volume                   = {31},

  __markedentry            = {[victor:6]},
  Abstract                 = {Gases in deepwater oil/gas spills can lose considerable amounts of the gas phase due to dissolution in water. Gas dissolution has a significant impact on the behavior of the oil/gas jet/plume because of its impact on the buoyancy. A method is presented in this paper for computing gas dissolution that covers a broad range of water depth, from shallow water where gases behave as ideal ones under low pressure to deepwater where gases behave as non-ideal ones under high pressures. The method presented also accounts for the spherical and non-spherical shapes of gas bubbles. The gas dissolution computations are validated by comparing the computed results with observed data from previously conducted laboratory experiments. The gas dissolution computation module is then integrated with a model for underwater oil/gas jets/plumes by Yapa and Zheng [J. Hydraul. Res. 35 (5) (1997) 673]. Scenario simulations are presented to show the impacts of gas dissolution on the behavior of jets/plumes. These scenarios show the impact of dissolution on the behavior of the jet/plume. The comparison of results using ideal gas conditions and non-ideal gas conditions is also shown. },
  Doi                      = {http://dx.doi.org/10.1016/S0924-7963(01)00067-7},
  ISSN                     = {0924-7963},
  Keywords                 = {Gas dissolution},
  Owner                    = {victor},
  Timestamp                = {2014.08.01},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S0924796301000677}
}

@Book{Долгоносов2009,
  Title                    = {{Нелинейная динамика экологических и гидрологических процессов}},
  Author                   = {Долгоносов, Б М},
  Editor                   = {Хубларян, М Г},
  Publisher                = {Книжный дом "Либроком"},
  Year                     = {2009},

  Pages                    = {440}
}

@book{Donelan2002,
address = {Washington, D. C.},
doi = {10.1029/GM127},
editor = {Donelan, M. A. and Drennan, W. M. and Saltzman, E. S. and Wanninkhof, R.},
isbn = {9781118668634},
month = jan,
publisher = {American Geophysical Union},
series = {Geophysical Monograph Series},
title = {{Gas Transfer at Water Surfaces}},
url = {http://doi.wiley.com/10.1029/GM127},
year = {2002}
}

@article{Heiskanen2014,
author = {Heiskanen, JOUNI J. and Mammarella, IVAN and Haapanala, SAMI and Pumpanen, JUKKA and Vesala, TIMO and MacIntyre, SALLY and Ojala, ANNE},
doi = {10.3402/tellusb.v66.22827},
issn = {1600-0889},
journal = {Tellus B},
keywords = {gas transfer,heat flux,lakes,modeling,wind speed},
language = {en},
month = may,
title = {{Effects of cooling and internal wave motions on gas transfer coefficients in a boreal lake}},
url = {http://www.tellusb.net/index.php/tellusb/article/view/22827/xml},
volume = {66},
year = {2014}
}

@article{Hanson2004,
author = {Hanson, Paul C. and Pollard, Amina I. and Bade, Darren L. and Predick, Katie and Carpenter, Stephen R. and Foley, Jonathan A.},
doi = {10.1111/j.1529-8817.2003.00805.x},
issn = {13541013},
journal = {Global Change Biology},
number = {8},
pages = {1285--1298},
title = {{A model of carbon evasion and sedimentation in temperate lakes}},
url = {http://doi.wiley.com/10.1111/j.1529-8817.2003.00805.x},
volume = {10},
year = {2004}
}
